AMModels
AMModels stores and organizes statistical models and associated datasets as unified R objects to codify knowledge for adaptive management and reproducible analyses.
Key Features:
- Unified storage: Stores models, associated datasets, and metadata together as a single object that can be saved to an .RData file.
- Model management: Systematically organizes analysis inputs, outputs, and descriptive metadata to preserve analytical components and enable revisiting and refining analyses.
- Adaptive management support: Codifies knowledge in model form to enable storage, retrieval, augmentation, and tracking of changes over time for adaptive management workflows.
Scientific Applications:
- Natural resource management: Supports codification and reuse of models and data for decision-making in natural resource management.
- Environmental science: Enables storage and retrieval of analytical outputs and datasets for environmental analyses and monitoring.
- Conservation biology: Facilitates iterative model-based knowledge capture and exchange for conservation planning and assessment.
- Longitudinal and iterative studies: Tracks model and data evolution over time to support longitudinal analyses and iterative analytical workflows.
Methodology:
Implemented as an R package (developed under R 3.2.2) that creates a cohesive structure integrating models, datasets, and metadata into a single object, systematically organizing inputs, outputs, and descriptive metadata and allowing the unified object to be saved to an .RData file for updates and tracking of changes over time.
Topics
Details
- Tool Type:
- library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 6/12/2018
- Last Updated:
- 11/25/2024
Operations
Publications
Donovan TM, Katz JE. AMModels: An R package for storing models, data, and metadata to facilitate adaptive management. PLOS ONE. 2018;13(2):e0188966. doi:10.1371/journal.pone.0188966. PMID:29489825. PMCID:PMC5830045.