ANASTASIA
ANASTASIA performs comprehensive metagenomic analysis of NGS-derived (meta)genomic sequence datasets to identify and annotate novel enzymes and peptides from environmental samples, with emphasis on thermal springs.
Key Features:
- Comprehensive metagenomics: Performs analysis of NGS (next-generation sequencing) metagenomic datasets from environmental samples, particularly thermal springs.
- Large-scale data handling: Provides a computational environment capable of handling large-scale bioinformatic analyses.
- Automated workflows: Executes automated workflows for processing (meta)genomic sequence datasets.
- Tool integration: Integrates publicly available tools and proprietary algorithms into those automated workflows.
- Sequence translation and synthetic interpretation: Supports nucleotide and amino acid sequence translation and synthetic interpretation and analysis as implied by the platform name.
- Annotation and interpretation: Enables fine annotation and interpretation of sequences to identify novel functional elements.
- Extensibility: Functions as a stable and extensible environment for a wide range of metagenomic applications.
Scientific Applications:
- Enzyme and peptide discovery: Mining environmental niches, including thermal springs, to discover novel enzymes and peptides with unique functional properties.
- Biocatalyst identification for biotechnology and biomedicine: Supporting identification of biocatalysts and biomolecules relevant to industrial biotechnology and biomedicine within the ELIXIR-GR project framework.
- Case example — EstDZ4: Enabled in silico identification of a novel thermostable esterase, EstDZ4, from a metagenomic sample collected in Krisuvik, Iceland.
Methodology:
Implements automated workflows that integrate publicly available tools and proprietary algorithms to process NGS (meta)genomic sequence datasets, perform nucleotide/amino-acid translation, and support sequence annotation and in silico identification.
Topics
Details
- Tool Type:
- desktop application, web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 7/25/2017
- Last Updated:
- 11/24/2024
Operations
Publications
Koutsandreas T, Ladoukakis E, Pilalis E, Zarafeta D, Kolisis FN, Skretas G, Chatziioannou AA. ANASTASIA: An Automated Metagenomic Analysis Pipeline for Novel Enzyme Discovery Exploiting Next Generation Sequencing Data. Frontiers in Genetics. 2019;10. doi:10.3389/fgene.2019.00469. PMID:31178894. PMCID:PMC6543708.