anota

anota is a software tool for determining actively translated mRNA levels independent of cytosolic mRNA levels. The anota algorithm uses partial variances with a random variance model.

Topic

Gene transcripts;Transcriptomics;Genomics

Detail

  • Operation: Gene expression analysis

  • Software interface: Command-line user interface;Library

  • Language: R

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 1.44.0

  • Credit: The Knut and Alice Wallenberg foundation, Le Fonds Québécois de la Recherche sur la Nature et les Technologies (FQRNT).

  • Input: anotaDataSet

  • Output: -

  • Contact: Ola Larsson ola.larsson@ki.se, Nahum Sonenberg nahum.sonenberg@mcgill.ca, Robert Nadon robert.nadon@mcgill.ca

  • Collection: Bioconductor

  • Maturity: Stable

Publications

  • anota: Analysis of differential translation in genome-wide studies
  • Larsson O, Sonenberg N, Nadon R. anota: Analysis of differential translation in genome-wide studies. Bioinformatics. 2011 May 15;27(10):1440-1. doi: 10.1093/bioinformatics/btr146. Epub 2011 Mar 21. PMID: 21422072.
  • https://doi.org/10.1093/bioinformatics/btr146
  • PMID: 21422072
  • PMC: -

Download and documentation

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