anTraX
anTraX performs high-throughput video tracking of color-tagged insects to enable individual-level behavioral analysis in group-living organisms.
Key Features:
- Neural Network Classification: Uses neural network algorithms for classification and identification of animals within video frames.
- Graph-Based Tracking Representation: Represents tracking data as a graph to maintain continuity and identity of each insect across frames.
- Color Tag Utilization: Relies on color tags to identify individuals, reducing dependence on high image resolution or large body size.
- Integration with Existing Tools: Interfaces with existing automated image analysis tools and methodologies for downstream analysis.
- Scalability and Automation: Supports large-scale experiments by enabling simultaneous monitoring of multiple social groups over extended periods.
Scientific Applications:
- Behavioral Ecology: Enables analysis of social interactions, communication, and collective behaviors at the individual level.
- Population Dynamics: Facilitates tracking of individual movements and interactions over time to study population-level dynamics and responses to environmental change.
- Automated Behavioral Analysis: Provides data compatible with automated image-analysis pipelines for extraction of behavioral patterns from large datasets.
Methodology:
anTraX applies neural network algorithms to classify color-tagged insects and constructs a dynamic graph, using graph-theory principles, to represent each insect's trajectory over time.
Topics
Details
- License:
- GPL-3.0
- Tool Type:
- command-line tool
- Programming Languages:
- MATLAB, Python
- Added:
- 1/18/2021
- Last Updated:
- 11/24/2024
Operations
Publications
Gal A, Saragosti J, Kronauer DJC. anTraX: high throughput video tracking of color-tagged insects. Unknown Journal. 2020. doi:10.1101/2020.04.29.068478.
Gal A, Saragosti J, Kronauer DJ. anTraX, a software package for high-throughput video tracking of color-tagged insects. eLife. 2020;9. doi:10.7554/elife.58145. PMID:33211008. PMCID:PMC7676868.
DOI: 10.7554/elife.58145
PMID: 33211008
PMCID: PMC7676868
Funding: - National Institute of General Medical Sciences: R35GM127007
- Klingenstein-Simons: Fellowship Award in the Neurosciences
- Human Frontier Science Program: LT001049/2015
- Rockefeller University: Kravis Fellowship