anTraX

anTraX performs high-throughput video tracking of color-tagged insects to enable individual-level behavioral analysis in group-living organisms.


Key Features:

  • Neural Network Classification: Uses neural network algorithms for classification and identification of animals within video frames.
  • Graph-Based Tracking Representation: Represents tracking data as a graph to maintain continuity and identity of each insect across frames.
  • Color Tag Utilization: Relies on color tags to identify individuals, reducing dependence on high image resolution or large body size.
  • Integration with Existing Tools: Interfaces with existing automated image analysis tools and methodologies for downstream analysis.
  • Scalability and Automation: Supports large-scale experiments by enabling simultaneous monitoring of multiple social groups over extended periods.

Scientific Applications:

  • Behavioral Ecology: Enables analysis of social interactions, communication, and collective behaviors at the individual level.
  • Population Dynamics: Facilitates tracking of individual movements and interactions over time to study population-level dynamics and responses to environmental change.
  • Automated Behavioral Analysis: Provides data compatible with automated image-analysis pipelines for extraction of behavioral patterns from large datasets.

Methodology:

anTraX applies neural network algorithms to classify color-tagged insects and constructs a dynamic graph, using graph-theory principles, to represent each insect's trajectory over time.

Topics

Details

License:
GPL-3.0
Tool Type:
command-line tool
Programming Languages:
MATLAB, Python
Added:
1/18/2021
Last Updated:
11/24/2024

Operations

Publications

Gal A, Saragosti J, Kronauer DJC. anTraX: high throughput video tracking of color-tagged insects. Unknown Journal. 2020. doi:10.1101/2020.04.29.068478.

Gal A, Saragosti J, Kronauer DJ. anTraX, a software package for high-throughput video tracking of color-tagged insects. eLife. 2020;9. doi:10.7554/elife.58145. PMID:33211008. PMCID:PMC7676868.

PMID: 33211008
PMCID: PMC7676868
Funding: - National Institute of General Medical Sciences: R35GM127007 - Klingenstein-Simons: Fellowship Award in the Neurosciences - Human Frontier Science Program: LT001049/2015 - Rockefeller University: Kravis Fellowship

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