Apache Taverna

Apache Taverna orchestrates execution of distributed web services and local applications into reproducible scientific workflows for bioinformatics analyses.


Key Features:

  • Integration of Web Services and Local Tools: Integrates distributed web services and local applications into cohesive analysis pipelines.
  • Execution Across Diverse Environments: Executes workflows on desktops, supercomputers, grid and cloud infrastructures via Taverna Server.
  • Extensive Tool Repository: Provides access to several thousand tools and resources from life science institutions.
  • Reusability and Sharing: Produces reusable workflows that can be shared through the MyExperiment repository.
  • Domain-Independence: Applies to bioinformatics and other scientific disciplines beyond life sciences.

Scientific Applications:

  • High-throughput omics analyses: Supports proteomics and transcriptomics workflows for high-throughput data processing.
  • Evidence gathering: Facilitates text mining and data mining for comprehensive evidence collection and integration.
  • In silico experiments: Enables execution of complex computational experiments through integrated workflows.

Methodology:

Integrates distributed web services and local applications into executable workflows and executes them via Taverna Server on desktops, supercomputers, grids, or cloud infrastructures, with workflows shareable via MyExperiment.

Topics

Details

License:
Apache-2.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
api, command-line tool, desktop application, web application, workflow
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Java, Ruby
Added:
2/18/2016
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Publications

Wolstencroft K, Haines R, Fellows D, Williams A, Withers D, Owen S, Soiland-Reyes S, Dunlop I, Nenadic A, Fisher P, Bhagat J, Belhajjame K, Bacall F, Hardisty A, Nieva de la Hidalga A, Balcazar Vargas MP, Sufi S, Goble C. The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud. Nucleic Acids Research. 2013;41(W1):W557-W561. doi:10.1093/nar/gkt328. PMID:23640334. PMCID:PMC3692062.

Documentation

Downloads

Links