ATAC Primer Tool (APT)

A tool for designing primers and identifying accurate normalization controls for ATAC-qPCR.

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Topics

Structural biology Epigenetics Molecular interactions, pathways and networks

Details

Cost:: Free of charge
Tool Type:: command-line tool
Programming Languages:: R, Perl
Added:: 5/15/2018
Last Updated:: 11/25/2024

Operations

Primer and probe design
Structure analysis

Publications

Yost KE, Carter AC, Xu J, Litzenburger U, Chang HY. ATAC Primer Tool for targeted analysis of accessible chromatin. Nature Methods. 2018;15(5):304-305. doi:10.1038/nmeth.4663. PMID:29702633. PMCID:PMC5942889.

DOI: 10.1038/nmeth.4663

PMID: 29702633

PMCID: PMC5942889

Documentation

General

https://github.com/ChangLab/ATACPrimerTool

Downloads

Binaries
https://github.com/ChangLab/ATACPrimerTool
Tool wrapper (Galaxy)
https://github.com/ChangLab/ATACPrimerTool/blob/master/Running_APT_with_Galaxy.md

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