arakno
arakno retrieves and processes spider nomenclature, distribution, and trait data via an R package interfacing with the World Spider Catalogue (WSC), the World Spider Trait (WST), and the Global Biodiversity Information Facility (GBIF) to support taxonomic, biogeographic, and trait-based ecological and evolutionary analyses.
Key Features:
- Integration with WSC, WST, and GBIF: Connects to the World Spider Catalogue (WSC), World Spider Trait (WST), and GBIF to access nomenclature, trait, and occurrence data.
- Species name verification: Checks species names against WSC nomenclature to ensure taxonomic accuracy.
- Distribution data retrieval and mapping: Obtains distribution records from WST and GBIF and supports generation of mapped representations of geographical occurrence.
- Trait data download: Downloads detailed spider trait data from the World Spider Trait database for trait-based analyses.
- Data preparation for analysis: Provides functions to prepare datasets for downstream statistical and comparative analyses.
Scientific Applications:
- Nomenclatural validation: Validates and standardizes spider species names for taxonomic and biodiversity studies.
- Biogeography and distribution modeling: Supplies occurrence and mapped distribution data for biogeographic assessments and habitat analyses.
- Trait-based ecological and evolutionary studies: Enables assembly of trait datasets from WST for ecological, functional, and evolutionary research.
- Statistical and comparative analyses: Produces analysis-ready datasets to support statistical tests and comparative phylogenetic studies.
Methodology:
Implements R functions to query the World Spider Catalogue, World Spider Trait, and GBIF for nomenclature, distribution, and trait data; verify species names against WSC; retrieve and map distribution records; download WST trait data; and prepare datasets for statistical analysis.
Topics
Details
- License:
- GPL-3.0
- Tool Type:
- library
- Programming Languages:
- R
- Added:
- 3/28/2022
- Last Updated:
- 3/28/2022
Operations
Data Inputs & Outputs
Data retrieval
Inputs
Outputs
Publications
Cardoso P, Pekár S. arakno - An R package for effective spider nomenclature, distribution and trait data retrieval from online resources. The Journal of Arachnology. 2022;50(1). doi:10.1636/joa-s-21-024.