Array Suite

Array Suite analyzes Next-Generation Sequencing (NGS) and -OMIC datasets, integrating Array Studio and Array Server to perform quality control, sequence alignment, variation detection, expression quantification, and junction discovery for genomics and transcriptomics research.

Key Features:

• Comprehensive Data Analysis: Supports quality control, sequence alignment, variation detection, expression quantification, and junction discovery across genomics, transcriptomics, proteomics, and metabolomics datasets.
• Efficient RNA-Seq Pipeline (Oshell): Implements an ultra-fast RNA-Seq analysis pipeline operating within the Oshell environment to process high-volume sequencing data.
• Array Server Backend: Provides storage and large-scale data processing capabilities for NGS and -OMIC datasets.
• Cross-Platform Compatibility: Operates on Linux and Windows computing environments.
• Scalable Computing Options: Supports stand-alone and cluster deployments with parallel computing capabilities for high-throughput analyses.

Scientific Applications:

• Transcriptome analysis: RNA-Seq processing for gene expression profiling and junction discovery.
• Variant detection: Identification and analysis of genetic variations from sequencing data.
• Expression quantification: Quantitative measurement of transcript abundance for differential expression studies.
• Multi-OMIC studies: Integration and analysis of genomics, transcriptomics, proteomics, and metabolomics datasets.
• High-throughput sequencing projects: Scalable processing for large NGS datasets.

Methodology:

Computational methods explicitly include quality control, sequence alignment, variation detection, expression quantification, junction discovery, an Oshell-based ultra-fast RNA-Seq pipeline, Array Server for data storage/processing, and support for parallel, stand-alone, and cluster computing.