AspGD
AspGD provides curated genomic data and gene annotations for Aspergillus species to support genetics, molecular biology, comparative genomics, and functional genomics research.
Key Features:
- High-Quality Manual Curation: Integrates experimentally derived information from peer-reviewed literature on Aspergillus genetics and molecular biology.
- Comparative Genomics for Annotation Refinement: Employs comparative genomics methodologies to iteratively refine and enhance structural gene annotations across multiple Aspergillus species.
- Research Tools for Data Analysis: Provides tools to access, explore, and analyze genomic sequences and annotations for Aspergillus genomes.
- Comprehensive Gene Annotations and Curated Literature: Maintains extensive gene models and literature-curated functional information to support identification of genetic variation and functional impacts.
Scientific Applications:
- Genomic Research: Enables identification of genetic variation and assessment of functional impacts through curated annotations and integrated experimental data.
- Comparative Studies: Facilitates evolutionary and phylogenetic analyses among Aspergillus species using comparative genomics-derived annotations.
- Functional Genomics: Supports elucidation of gene functions and regulatory mechanisms in Aspergilli using curated annotations and literature-derived evidence.
Methodology:
Automated computational methods include data integration by aggregating experimental results from publications and annotation refinement using comparative genomics to iteratively update structural gene annotations across Aspergillus species.
Topics
Details
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 3/27/2017
- Last Updated:
- 11/25/2024
Operations
Publications
Arnaud MB, Chibucos MC, Costanzo MC, Crabtree J, Inglis DO, Lotia A, Orvis J, Shah P, Skrzypek MS, Binkley G, Miyasato SR, Wortman JR, Sherlock G. The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community. Nucleic Acids Research. 2009;38(suppl_1):D420-D427. doi:10.1093/nar/gkp751. PMID:19773420. PMCID:PMC2808984.