AssemblX
AssemblX assembles multigene DNA constructs to enable construction of complex genetic circuits and biological pathways in synthetic biology and biotechnology.
Key Features:
- Scalability: Supports assembly of up to 25 functional units from over 75 subunits, including promoters, coding sequences, and terminators.
- Overlap-Based Cloning: Employs overlap-based, scar-free cloning methods that are sequence-independent at the initial assembly level.
- Rare Cutting Homing Endonucleases: Utilizes rare cutting homing endonucleases for standardized, polymerase chain reaction-free assembly into multigene modules, with computationally optimized overlap sequences to ensure precise and efficient gene integration.
- Marker Switching Strategies: Incorporates selection and marker switching strategies to enable transfer of assembled constructs to desired expression hosts.
Scientific Applications:
- Genetic Circuit Engineering: Construction of large genetic circuits composed of multiple genes and regulatory parts in synthetic biology.
- Multigene Pathway Assembly: Assembly of entire biological pathways for metabolic engineering and biotechnology applications.
Methodology:
Computationally optimized overlap sequence design using computational algorithms for overlap design.
Topics
Details
- Tool Type:
- web application, workflow
- Added:
- 1/18/2021
- Last Updated:
- 1/28/2021
Operations
Publications
Machens F, Hochrein L. The AssemblX Toolkit for Reliable and User-Friendly Multigene Assemblies. Methods in Molecular Biology. 2020. doi:10.1007/978-1-0716-0908-8_3. PMID:32809192.
PMID: 32809192
Hochrein L, Machens F, Gremmels J, Schulz K, Messerschmidt K, Mueller-Roeber B. AssemblX: a user-friendly toolkit for rapid and reliable multi-gene assemblies. Nucleic Acids Research. 2017. doi:10.1093/nar/gkx034. PMID:28130422. PMCID:PMC5449548.
DOI: 10.1093/nar/gkx034