Atlas

Collection of software tools to facilitate the assembly of large genomes from whole genome shotgun reads, or a combination of whole genome shotgun reads and BAC or other localized reads.

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Topics

Sequence assembly Genomics Whole genome sequencing

Details

Tool Type:: command-line tool
Operating Systems:: Linux
Programming Languages:: Perl
Added:: 12/18/2017
Last Updated:: 12/10/2018

Operations

Sequence assembly
Genome assembly

Data Inputs & Outputs

Genome assembly

Inputs

Protein sequence

Outputs

Sequence search results
- Textual format
Sequence alignment (protein)
- Binary format
Sequence alignment (pair)
- Textual format

Other operations do not define inputs or outputs.

Documentation

General

https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas_readme.txt

Links

Software catalogue

http://www.mybiosoftware.com/atlas-2005-genome-assembly-suite.html

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