AutoPrognosis 2.0

AutoPrognosis 2.0 automates construction and optimization of diagnostic and prognostic machine-learning models for clinical risk prediction.


Key Features:

  • Automated Machine Learning (AutoML): Leverages AutoML to search and optimize end-to-end machine-learning pipelines and hyperparameters.
  • Pipeline optimization and model configuration: Identifies optimal model configurations and pipeline components for predictive performance on complex datasets.
  • Model explainability: Incorporates tools to enhance interpretability of model outputs and risk scores.
  • Handling complex patient covariates: Captures complex interactions among patient covariates within predictive models.
  • Clinical demonstrator deployment: Facilitates deployment of trained models as clinical demonstrators in healthcare settings.

Scientific Applications:

  • Prognostic risk scores: Construction and validation of prognostic risk scores, exemplified by a diabetes risk model developed using UK Biobank (prospective study of over 500,000 individuals) that showed superior discrimination versus existing expert clinical risk scores.
  • Personalized diagnostics: Development of personalized diagnostic tools and individualized risk prediction models for clinical decision support.

Methodology:

Uses automated machine learning techniques to develop and optimize predictive models by automating pipeline construction, handling complex datasets, identifying optimal model configurations, and incorporating model explainability tools.

Topics

Details

License:
Apache-2.0
Cost:
Free of charge
Tool Type:
library
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
1/29/2024
Last Updated:
11/24/2024

Operations

Publications

Imrie F, Cebere B, McKinney EF, van der Schaar M. AutoPrognosis 2.0: Democratizing diagnostic and prognostic modeling in healthcare with automated machine learning. PLOS Digital Health. 2023;2(6):e0000276. doi:10.1371/journal.pdig.0000276. PMID:37347752. PMCID:PMC10287005.

Links