AutoScore-Survival
AutoScore-Survival generates interpretable, integer-valued scoring systems for time-to-event (survival) outcomes by selecting predictors with random survival forests and weighting them using Cox proportional hazards regression for clinical risk stratification.
Key Features:
- Machine Learning Integration: Employs random survival forests for variable selection from right-censored survival data.
- Cox Regression for Score Weighting: Uses Cox proportional hazards regression to assign weights to selected predictors.
- Parsimonious Scoring System: Produces more parsimonious scoring systems compared with penalized likelihood approaches and stepwise selection while maintaining performance.
- Integer-valued Scores: Generates integer-valued scores to support interpretability and application in clinical risk assessment.
- Systematic Methodology: Provides a guideline-driven, reproducible framework for developing time-to-event scores from baseline covariates.
Scientific Applications:
- ICU 90-day survival prediction: Applied to predict 90-day survival outcomes for intensive care unit patients.
- Model comparison and benchmarking: Compared with random survival forests and traditional clinical scores, achieving an integrated area under the curve of 0.782 (95% CI: 0.767–0.794).
Methodology:
Automates score generation from time-to-event data and baseline covariates via dataset splitting, variable selection using random survival forests, and score derivation using Cox proportional hazards regression.
Topics
Details
- Cost:
- Free of charge
- Tool Type:
- library, workflow
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- R
- Added:
- 5/18/2022
- Last Updated:
- 5/18/2022
Operations
Publications
Xie F, Ning Y, Yuan H, Goldstein BA, Ong MEH, Liu N, Chakraborty B. AutoScore-Survival: Developing interpretable machine learning-based time-to-event scores with right-censored survival data. Journal of Biomedical Informatics. 2022;125:103959. doi:10.1016/j.jbi.2021.103959. PMID:34826628.