BayesForest

BayesForest generates realistic morphological tree clones from laser scanning data to model and compare tree morphology using a multipurpose procedural stochastic growth model and a structural distance metric.


Key Features:

  • Detailed Reconstruction: BayesForest utilizes laser scanning data for precise reconstruction of tree morphology.
  • Statistical Measure of Similarity: The algorithm incorporates a structural distance metric to compare pairs of trees and quantify morphological similarity.
  • Stochastic Growth Model: BayesForest employs a multipurpose procedural stochastic growth model that can be adjusted to replicate specific morphological characteristics of measured trees.
  • Programmable Interface: The implementation includes a programmable interface for manipulation of the data inputs required by the algorithm.

Scientific Applications:

  • Ecology and Forestry: Analysis of how variations in tree morphology influence landscape formation, habitat creation, and eco-physiological characteristics.
  • Plant Science Research: Exploration of the morphological potential of growth models and replication of experimentally measured tree forms for theoretical and experimental studies.

Methodology:

Reconstruction of tree forms from laser scanning data; quantification of structural similarities using the structural distance metric; generation of tree clones via a multipurpose procedural stochastic growth model adjustable to observed morphologies.

Topics

Details

License:
MIT
Tool Type:
library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
MATLAB
Added:
7/15/2018
Last Updated:
11/25/2024

Operations

Publications

Potapov I, Järvenpää M, Åkerblom M, Raumonen P, Kaasalainen M. Bayes Forest: a data-intensive generator of morphological tree clones. GigaScience. 2017;6(10). doi:10.1093/gigascience/gix079. PMID:29020742. PMCID:PMC5632294.

Documentation