BayeSSC

Modification of SIMCOAL 1.0. It is powerful because it allows flexible coalescent modelling from a variety of different priors. The enables parameter estimation, likelihood calculations, and Bayesian inference.

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Topics

Genetics Evolutionary biology Phylogenetics

Details

Tool Type:: command-line tool
Operating Systems:: Linux, Windows, Mac
Programming Languages:: C++
Added:: 8/3/2017
Last Updated:: 11/24/2024

Operations

Statistical inference

Data Inputs & Outputs

Statistical inference

Inputs

RNA sequence

Outputs

Publications

Excoffier L. Computer note. SIMCOAL: a general coalescent program for the simulation of molecular data in interconnected populations with arbitrary demography. Journal of Heredity. 2000;91(6):506-509. doi:10.1093/jhered/91.6.506. PMID:11218093.

DOI: 10.1093/jhered/91.6.506

PMID: 11218093

Documentation

General

https://web.stanford.edu/group/hadlylab/ssc/

Links

Software catalogue

http://www.mybiosoftware.com/bayessc-bayesian-serial-simcoal.html

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