BBMap

BBMap is a fast splice-aware aligner for RNA and DNA. It is faster than almost all short-read aligners, yet retains unrivaled sensitivity and specificity, particularly for reads with many errors and indels.

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Topics

Sequencing RNA splicing Whole genome sequencing Phylogenetics Metagenomics RNA-Seq

Details

License:: BSD-3-Clause
Maturity:: Mature
Tool Type:: workflow
Operating Systems:: Windows, Mac
Programming Languages:: Java
Added:: 1/13/2017
Last Updated:: 4/14/2021

Operations

RNA-Seq analysis
Read binning
Read mapping
Sequence alignment
Sequence contamination filtering
Sequence trimming

Data Inputs & Outputs

RNA-Seq analysis

Inputs

Protein sequence record
- WIG

Outputs

Protein features
- Image format

Documentation

General

https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/bbmap-guide/

Links

Repository

https://sourceforge.net/projects/bbmap/

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