BEST
BEST models X-ray crystallography intensity decay from radiation damage and optimizes protein crystallography data-collection strategies using log-linear models of intensity as functions of resolution and cumulative X-ray dose.
Key Features:
- Radiation Damage Mitigation: Models radiation-induced intensity variation as log-linear functions dependent on resolution and cumulative X-ray dose.
- Predictive Modeling: Predicts characteristics of yet-to-be-collected diffraction data and relates achievable data completeness, resolution, and signal-to-noise statistics.
- Optimization Algorithms: Designs data-collection plans by optimizing experimental parameters to balance data completeness, resolution, and signal-to-noise.
Scientific Applications:
- Protein Crystallography: Planning and optimizing X-ray data collection in structural biology to obtain high-quality diffraction data while minimizing radiation damage.
Methodology:
Models the impact of radiation on intensity variations using log-linear approximation as a function of resolution and cumulative X-ray dose, and employs predictive analytics to forecast experimental outcomes and optimize data-collection strategies based on objectives for data completeness, resolution, and signal-to-noise ratios.
Topics
Details
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Mac
- Added:
- 8/3/2017
- Last Updated:
- 11/25/2024
Operations
Publications
Bourenkov GP, Popov AN. Optimization of data collection taking radiation damage into account. Acta Crystallographica Section D Biological Crystallography. 2010;66(4):409-419. doi:10.1107/s0907444909054961. PMID:20382994. PMCID:PMC2852305.