BEST

BEST models X-ray crystallography intensity decay from radiation damage and optimizes protein crystallography data-collection strategies using log-linear models of intensity as functions of resolution and cumulative X-ray dose.


Key Features:

  • Radiation Damage Mitigation: Models radiation-induced intensity variation as log-linear functions dependent on resolution and cumulative X-ray dose.
  • Predictive Modeling: Predicts characteristics of yet-to-be-collected diffraction data and relates achievable data completeness, resolution, and signal-to-noise statistics.
  • Optimization Algorithms: Designs data-collection plans by optimizing experimental parameters to balance data completeness, resolution, and signal-to-noise.

Scientific Applications:

  • Protein Crystallography: Planning and optimizing X-ray data collection in structural biology to obtain high-quality diffraction data while minimizing radiation damage.

Methodology:

Models the impact of radiation on intensity variations using log-linear approximation as a function of resolution and cumulative X-ray dose, and employs predictive analytics to forecast experimental outcomes and optimize data-collection strategies based on objectives for data completeness, resolution, and signal-to-noise ratios.

Topics

Details

Tool Type:
command-line tool
Operating Systems:
Linux, Mac
Added:
8/3/2017
Last Updated:
11/25/2024

Operations

Publications

Bourenkov GP, Popov AN. Optimization of data collection taking radiation damage into account. Acta Crystallographica Section D Biological Crystallography. 2010;66(4):409-419. doi:10.1107/s0907444909054961. PMID:20382994. PMCID:PMC2852305.

Documentation

Links