BGFD
BGFD provides an integrated multi-omics resource characterizing 5593 genes across 77 barley (Hordeum vulgare L.) gene families to support analyses of molecular function and evolutionary history.
Key Features:
- Integrated multi-omics datasets: Compiles expression pattern data and genetic variation maps for 5593 genes across 77 gene families.
- Physicochemical and gene structure annotations: Supplies physicochemical property data and gene structure information for annotated genes.
- Phylogenetic and motif analyses: Includes phylogenetic relationships and motif organization data for gene family comparisons.
- Analysis toolkits: Provides BLAST search capability and additional analysis tools for sequence-based investigations.
Scientific Applications:
- Gene family annotation and identification: Enables systematic annotation and identification of barley gene families for functional studies.
- Domestication and evolutionary research: Supports investigations into barley domestication processes and adaptive evolution using genetic variation and phylogenetic data.
- Agronomic trait exploration: Facilitates screening of candidate genes associated with agronomic traits using integrated expression and variation data.
Methodology:
Systematic identification and annotation of gene families using compiled multi-omics datasets to generate expression pattern profiles and genetic variation maps.
Topics
Details
- License:
- Other
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 10/27/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Li T, Bian J, Tang M, Shangguan H, Zeng Y, Luo R, Sun H, Ke Q, Nie X, Li Y, Cui L. BGFD: an integrated multi-omics database of barley gene families. BMC Plant Biology. 2022;22(1). doi:10.1186/s12870-022-03846-9. PMID:36131236. PMCID:PMC9490965.
PMID: 36131236
PMCID: PMC9490965
Funding: - National Natural Science Foundation of China: 32060458
- Postdoctoral Research Foundation of China: 2022M713430
- Natural Science Foundation of Jiangxi Province: 20202BAB215002