BIIGLE
BIIGLE provides image and video annotation for marine science to generate curated annotations and training data for observational analyses and machine-learning applications.
Key Features:
- Manual and computer-assisted annotation: Supports manual full-frame image and video annotation alongside computer-assisted techniques to annotate frames and collect training data for machine-learning-based (semi-)automatic annotation.
- Video annotation: Includes capabilities for annotating video sequences and individual frames extracted from video.
- Large-image and large-scale dataset support: Handles large gigapixel images and large-scale imaging datasets spanning extensive areas and long-term observation periods.
- Collaborative taxonomies and label tree collaboration: Enables custom taxonomies, enhanced label tree collaboration, and quality-control workflows to maintain consistent annotations across users and projects.
- Scalability and deployment: Can be deployed in cloud platforms, local networks, or on mobile devices to support diverse processing and annotation environments.
- Machine learning-assisted annotation: Integrates machine learning-assisted image annotation to increase annotation throughput and support automated workflows.
- Application instance federation: Supports application instance federation to integrate annotation instances across different research groups and projects.
Scientific Applications:
- Large-scale marine imaging analysis: Facilitates annotation and analysis of extensive marine imaging datasets for observational studies and long-term monitoring.
- Training data generation for machine learning: Produces curated annotations and labeled datasets for developing and validating machine-learning and computer-vision methods.
- Consistent multi-user annotation: Supports collaborative taxonomy development and quality control to enable reproducible comparative studies across teams.
Methodology:
Combines manual full-frame image and video annotation with computer-assisted techniques to collect training data for machine-learning-based (semi-)automatic annotation.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Linux
- Programming Languages:
- PHP, JavaScript, Python
- Added:
- 12/13/2022
- Last Updated:
- 12/13/2022
Operations
Publications
Langenkämper D, Zurowietz M, Schoening T, Nattkemper TW. BIIGLE 2.0 - Browsing and Annotating Large Marine Image Collections. Frontiers in Marine Science. 2017;4. doi:10.3389/fmars.2017.00083.
Zurowietz M, Nattkemper TW. Current Trends and Future Directions of Large Scale Image and Video Annotation: Observations From Four Years of BIIGLE 2.0. Frontiers in Marine Science. 2021;8. doi:10.3389/fmars.2021.760036.
Documentation
Downloads
- Software packagehttps://github.com/biigle/biigleThe link points to the production configuration of BIIGLE that can be used to set up the software.
- Source codehttps://github.com/biigle/core