BioCatalogue
BioCatalogue provides a centralized registry and catalog of bioinformatics web services for discovery, programmatic access, and monitoring to support computational life-science workflows.
Key Features:
- Centralized Registry: Service registration and cataloguing of life-science web services.
- Multi-faceted Search Capabilities: Search and discovery by technical types, bioinformatics categories, user tags, service providers, and data inputs/outputs.
- Quality Monitoring: Continuous monitoring of registered services to detect service errors and functional failures.
- Programmatic Web Service Interface: A Web Service interface that enables automated access and integration into workflows.
Scientific Applications:
- Service Discovery: Identifying and selecting web services for bioinformatics analyses and data processing.
- Workflow Integration: Enabling automation and composition of computational workflows via programmatic service access.
- Reproducibility Support: Supporting reproducible computational experiments by providing a cataloged and monitored set of web services.
Methodology:
Systematic service registration and continuous monitoring combined with automated quality checks.
Topics
Details
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Java, Ruby
- Added:
- 2/14/2017
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Annotation
Publications
Bhagat J, Tanoh F, Nzuobontane E, Laurent T, Orlowski J, Roos M, Wolstencroft K, Aleksejevs S, Stevens R, Pettifer S, Lopez R, Goble CA. BioCatalogue: a universal catalogue of web services for the life sciences. Nucleic Acids Research. 2010;38(Web Server):W689-W694. doi:10.1093/nar/gkq394. PMID:20484378. PMCID:PMC2896129.
Documentation
API documentation
https://www.biocatalogue.org/wiki/doku.php?id=public:api