abseqR

abseqR extends antibody repertoire sequencing analysis with plotting, reporting, and comparative downstream analysis capabilities for abseqPy output.

Key Features:

• Plotting capabilities: Generates visualizations for Rep-Seq datasets of antibody libraries.
• Interactive HTML report generation: Produces interactive HTML reports for viewing and sharing repertoire analysis results.
• Comparative repertoire analysis: Compares multiple repertoire analyses from abseqPy output.
• Downstream analysis extension: Performs further downstream analysis on abseqPy output data.

Scientific Applications:

• Antibody library sequencing analysis: Supports analysis of sequencing datasets generated from antibody libraries.
• Repertoire sequencing (Rep-Seq) reporting: Enables reporting and data analysis functionalities for Rep-Seq datasets.

Methodology:

abseqR operates as a companion package to abseqPy, processing its output to generate plots, interactive HTML reports, and comparative analyses of multiple repertoire analyses.