biodbChebi

biodbChebi provides programmatic access to the ChEBI Database through the biodb package framework for retrieving chemical entries and searching by molecular properties.


Key Features:

  • Accession-based retrieval: Retrieves database entries using their ChEBI accession numbers.
  • Web service search: Searches the ChEBI Database by name, mass, and other fields through web services.

Scientific Applications:

  • Chemical entity lookup: Enables retrieval of standardized chemical information from ChEBI for downstream bioinformatics analyses.
  • Compound identification: Supports searching for chemical compounds by molecular mass and nomenclature in metabolomics and cheminformatics workflows.

Methodology:

Connects to the ChEBI Database through the biodb package framework; retrieves entries by accession number and accesses web services for field-based searches.

Collections

Details

License:
AGPL-3.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Mac, Windows
Programming Languages:
R
Added:
10/2/2026
Last Updated:
10/2/2026

Operations

Documentation

Downloads