biodbChebi
biodbChebi provides programmatic access to the ChEBI Database through the biodb package framework for retrieving chemical entries and searching by molecular properties.
Key Features:
- Accession-based retrieval: Retrieves database entries using their ChEBI accession numbers.
- Web service search: Searches the ChEBI Database by name, mass, and other fields through web services.
Scientific Applications:
- Chemical entity lookup: Enables retrieval of standardized chemical information from ChEBI for downstream bioinformatics analyses.
- Compound identification: Supports searching for chemical compounds by molecular mass and nomenclature in metabolomics and cheminformatics workflows.
Methodology:
Connects to the ChEBI Database through the biodb package framework; retrieves entries by accession number and accesses web services for field-based searches.
Collections
Details
- License:
- AGPL-3.0
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Mac, Windows
- Programming Languages:
- R
- Added:
- 10/2/2026
- Last Updated:
- 10/2/2026
Operations
Documentation
User manual
https://bioconductor.org/packages/biodbChebiDownloads
- Source codehttps://github.com/pkrog/biodbChebi