ExpoRiskR
ExpoRiskR provides tools for exposure-aware multi-omics risk modeling in translational and environmental health studies.
Key Features:
- Sample Alignment: Aligns sample identifiers across exposure and multi-omics blocks.
- Preprocessing: Performs lightweight preprocessing of multi-omics data.
- Association Modeling: Fits exposure-adjusted association models to build interpretable microbe–metabolite networks.
- Exposure Perturbation Analysis: Computes simple exposure perturbation summaries.
- Visualization: Generates publication-ready visualizations.
- Input Flexibility: Workflows support both matrix-based inputs and SummarizedExperiment objects.
Scientific Applications:
- Translational Health Studies: Supports exposure-aware multi-omics risk modeling in translational health research.
- Environmental Health Studies: Supports exposure-aware multi-omics risk modeling in environmental health research.
- Microbe–Metabolite Network Inference: Builds interpretable microbe–metabolite networks through exposure-adjusted association modeling.
Methodology:
The package aligns sample identifiers across exposure and multi-omics blocks, performs lightweight preprocessing, and fits exposure-adjusted association models.
Collections
Details
- License:
- MIT
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Mac, Windows
- Programming Languages:
- R
- Added:
- 8/30/2026
- Last Updated:
- 8/30/2026
Operations
Publications
Documentation
User manual
https://bioconductor.org/packages/ExpoRiskRDownloads
- Source codehttps://github.com/ppchaudhary/ExpoRiskR