factR

factR processes and interacts with custom-assembled transcriptomes (GTF) to construct CDS information on custom transcripts and predict functional output.

Key Features:

• CDS construction: Constructs CDS information on custom transcripts.
• Functional prediction: Predicts functional output of custom transcripts.
• Transcript plotting: Plots transcripts.
• Chromosome and gene correction: Corrects chromosome and gene information.
• New transcript shortlisting: Shortlists new transcripts.

Scientific Applications:

• Custom transcriptome analysis: Processes and interacts with custom-assembled transcriptomes in GTF format.
• Functional annotation: Annotates functional consequences of custom transcript structures.

Methodology:

factR constructs CDS information on custom transcripts and subsequently predicts functional output.