FastqCleaner

FastqCleaner performs quality control, filtering, and trimming of FASTQ files through a pipeline built on Biostrings and ShortRead infrastructure.

Key Features:

• FASTQ Processing: Processes Single-Read and Paired-End FASTQ files locally.
• Quality Control Diagnostics: Generates diagnostic interactive plots including CG content and per-base sequence quality for both input and output files.
• Bioconductor Integration: Implements data processing based on Biostrings and ShortRead infrastructure.

Scientific Applications:

• Sequencing Data Preprocessing: Filters and trims FASTQ files to improve data quality for downstream analyses.
• Quality Assessment: Evaluates CG content and per-base sequence quality metrics before and after processing.

Methodology:

Data processing pipeline based on Biostrings and ShortRead infrastructure.