FinfoMDS
FinfoMDS implements a multidimensional scaling-based ordination method that configures data distribution based on the F-statistic (i.e., the ratio of dispersion between groups with shared or differing labels) for microbiome visualization.
Key Features:
- F-informed ordination: Configures data distribution using the F-statistic as the ratio of dispersion between groups with shared or differing labels.
- Multidimensional scaling integration: Employs MDS as the underlying ordination framework for dimensionality reduction and visualization.
Scientific Applications:
- Microbiome visualization: Generates ordination plots for exploring patterns in microbiome data based on group dispersion structure.
Methodology:
Multidimensional scaling configured by the F-statistic, calculated as the ratio of dispersion between groups with shared or differing labels.
Collections
Details
- License:
- GPL-3.0
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Mac, Windows
- Programming Languages:
- R
- Added:
- 9/1/2026
- Last Updated:
- 9/1/2026
Operations
Publications
Documentation
User manual
https://bioconductor.org/packages/FinfoMDSDownloads
- Source codehttps://github.com/soob-kim/FinfoMDS