fraq

fraq provides a high-throughput extensible toolkit for processing FASTQ data by enabling users to build small programmatic kernels that define custom FASTQ processing tasks.

Key Features:

• Extensible Kernel Framework: Users can quickly build small programmatic kernels to define any FASTQ processing task.
• Concurrent I/O and Data Processing: Builds on Intel TBB's flow graph to orchestrate concurrent operations.
• High-Throughput Performance: Throughput scales to compression and disk speed limits.
• Predefined Kernels: Ships with a suite of predefined kernels for common FASTQ tasks.

Scientific Applications:

• FASTQ Data Processing: Supports any custom FASTQ processing task through user-defined programmatic kernels.
• Common FASTQ Tasks: Predefined kernels enable standard FASTQ processing workflows without custom development.

Methodology:

Builds on Intel TBB's flow graph to orchestrate concurrent I/O and data processing.