geomeTriD

geomeTriD provides interactive 3D visualization of chromatin structures using WebGL-based 'three.js' or the rgl rendering library to identify and explore spatial chromatin patterns within genomic regions.

Key Features:

• 3D Chromatin Visualization: Generates dynamic 3D plots of chromatin structures using WebGL-based 'three.js' or the rgl rendering library.
• Spatial Pattern Detection: Enables identification and exploration of spatial chromatin patterns within genomic regions.
• Structural Comparison: Supports comparison of structural dynamics across different conditions and data types.
• Shiny Integration: Produces HTML widgets that integrate with Shiny applications for interactive visualization.

Scientific Applications:

• Chromatin Organization Visualization: Enables researchers to visualize three-dimensional chromatin organization in genomic regions.
• Spatial Feature Detection: Facilitates detection of spatial features in chromatin structure data.
• Epigenetic Data Visualization: Supports interactive 3D plotting of epigenetic data.
• Single Cell Data Visualization: Supports interactive 3D plotting of single cell data.

Methodology:

The package uses WebGL-based 'three.js' or the rgl rendering library for 3D rendering of chromatin structures.