gg4way

gg4way creates 4way plots that compare logFC values from two contrasts of differential gene expression using the ggplot2 framework and supports popular Bioconductor objects.

Key Features:

• 4way Plot Generation: Creates 4way plots for visualizing and comparing logFC values from two differential expression contrasts.
• ggplot2 Integration: Builds plots using the ggplot2 framework for flexible and customizable visualization.
• Bioconductor Object Support: Supports popular Bioconductor objects for seamless integration into differential expression workflows.
• Correlation Analysis: Provides information about the correlation between contrasts.
• Significant Gene Identification: Identifies and highlights significant genes of interest across contrasts.

Scientific Applications:

• Differential Gene Expression Comparison: Enables direct comparison of logFC values between two differential expression contrasts to identify concordant and discordant gene regulation patterns.

Methodology:

The package creates 4way plots using the ggplot2 framework and supports popular Bioconductor objects.