ggkegg

ggkegg imports, parses, analyzes, and visualizes KEGG data such as KEGG PATHWAY and KEGG MODULE using ggplot2 and ggraph through the grammar of graphics, enabling direct visualization of results from various omics analysis packages.

Key Features:

• KEGG Data Import and Parsing: Imports and parses KEGG PATHWAY and KEGG MODULE data for downstream analysis.
• Grammar of Graphics Visualization: Visualizes KEGG information using ggplot2 and ggraph through the grammar of graphics framework.
• Omics Integration: Enables direct visualization of results from various omics analysis packages.
• Network Analysis: Supports network analyses of KEGG data.

Scientific Applications:

• Single-Cell Analysis: Supports visualization and analysis of KEGG pathways in single-cell transcriptome data.
• Bulk Transcriptome Analysis: Enables KEGG-based analysis and visualization of bulk RNA sequencing data.
• Microbiome Analysis: Facilitates KEGG pathway and module analysis in microbiome studies.
• Systems Biology Research: Supports analysis of complex biological networks using KEGG as a systems biology resource.

Methodology:

The package integrates KEGG information with ggplot2 and ggraph for enhanced visualization and network analyses.