hicVennDiagram

hicVennDiagram generates high-resolution Venn and Upset plots for genomic interaction data from HiC, ChIA-PET, HiChIP, PLAC-Seq, Hi-TrAC, HiCAR, and related assays.

Key Features:

• Venn diagram generation: Produces high-resolution Venn plots for genomic interaction data.
• Upset plot generation: Produces high-resolution Upset plots for genomic interaction data.
• Count method correction: Generates plots specifically crafted to eliminate deceptive visual representation caused by the counts method.

Scientific Applications:

• HiC data visualization: Visualizes overlaps in genomic interaction data from HiC experiments.
• ChIA-PET data visualization: Visualizes overlaps in genomic interaction data from ChIA-PET experiments.
• HiChIP data visualization: Visualizes overlaps in genomic interaction data from HiChIP experiments.
• PLAC-Seq data visualization: Visualizes overlaps in genomic interaction data from PLAC-Seq experiments.
• Hi-TrAC data visualization: Visualizes overlaps in genomic interaction data from Hi-TrAC experiments.
• HiCAR data visualization: Visualizes overlaps in genomic interaction data from HiCAR experiments.

Methodology:

The package generates plots specifically crafted to eliminate the deceptive visual representation caused by the counts method.