igvShiny
igvShiny wraps the Integrative Genomics Viewer (IGV) as an htmlwidget module for interactive visualization and exploration of integrated genomic data within Shiny applications.
Key Features:
- IGV htmlwidget wrapper: Encapsulates the Integrative Genomics Viewer as an htmlwidget for embedding in R-based web applications.
- Shiny module integration: Functions as a reusable module within Shiny apps for interactive genomic data visualization.
Scientific Applications:
- Integrated genomic data visualization: Enables interactive exploration of diverse genomic data types through the IGV interface embedded in Shiny applications.
Methodology:
The package implements an htmlwidget wrapper around the Integrative Genomics Viewer (IGV) JavaScript library for use as a Shiny module.
Collections
Details
- License:
- MIT
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Mac, Windows
- Programming Languages:
- R
- Added:
- 9/1/2026
- Last Updated:
- 9/1/2026
Operations
Publications
Documentation
User manual
https://bioconductor.org/packages/igvShinyDownloads
- Source codehttps://github.com/gladkia/igvShiny
- Source codehttps://gladkia.github.io/igvShiny/