iSEEde

iSEEde extends the iSEE package with additional panel classes and modes that facilitate the analysis of precomputed differential expression results embedded in SummarizedExperiment objects.

Key Features:

• Differential Expression Result Embedding: Provides methods to embed precomputed differential expression results into SummarizedExperiment objects in a format compatible with iSEE interactive visualisation.
• Extended Panel Classes: Includes additional classes for panels or modes dedicated to differential expression analysis within iSEE applications.
• iSEE Integration: Operates as an extension package that adds functionality to the base iSEE framework without performing differential expression computation itself.

Scientific Applications:

• Differential Expression Visualisation: Enables interactive exploration and visualisation of precomputed differential expression results through extended iSEE panel functionality.
• SummarizedExperiment Workflow Integration: Supports standard Bioconductor data containers by embedding results in SummarizedExperiment objects for downstream interactive analysis.

Methodology:

The package embeds precomputed differential expression results into SummarizedExperiment objects using methods that ensure compatibility with iSEE interactive visualisation applications.