iSEEpathways

iSEEpathways extends the iSEE package with additional panel classes and modes that facilitate the analysis and interactive visualisation of precomputed pathway analysis results embedded in SummarizedExperiment objects.

Key Features:

• Panel Extension: Provides additional classes for panels and modes dedicated to pathway analysis results.
• Result Embedding: Enables embedding of precomputed pathway analysis results into SummarizedExperiment objects in a format compatible with iSEE interactive visualisation.

Scientific Applications:

• Pathway Analysis Visualisation: Supports interactive exploration and visualisation of precomputed pathway analysis results within the iSEE framework.

Methodology:

The package provides methods to embed precomputed pathway analysis results into SummarizedExperiment objects for compatibility with iSEE interactive visualisation applications; it does not perform pathway analysis itself.