LRBaseDbi
LRBaseDbi provides a DBI-based interface to construct LRBase annotation packages (LRBase.XXX.eg.db) for ligand-receptor interaction data.
Key Features:
- LRBase Package Construction: Enables programmatic generation of species-specific LRBase annotation databases following the standard Bioconductor .eg.db package format.
- DBI Interface: Implements database interface methods for storing and querying ligand-receptor pair annotations.
Scientific Applications:
- Ligand-Receptor Interaction Analysis: Supports construction of reference databases for studying cell-cell communication through ligand-receptor pairs across different species.
Methodology:
The package uses DBI to provide a database interface for constructing LRBase.XXX.eg.db packages.
Collections
Details
- License:
- Artistic-2.0
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Mac, Windows
- Programming Languages:
- R
- Added:
- 9/1/2026
- Last Updated:
- 9/1/2026
Operations
Publications
Documentation
User manual
https://bioconductor.org/packages/LRBaseDbi