metabom8
metabom8 provides tools for 1D NMR metabolomics workflows, including import and preprocessing of Bruker experiments, multivariate modeling, and model analytics and validation.
Key Features:
- Bruker Experiment Import and Preprocessing: Supports import and preprocessing of Bruker NMR experiments.
- Multivariate Modeling: Implements PCA, PLS, and OPLS for metabolomics data analysis.
- Model Analytics and Validation: Provides y-permutations and cv-anova for model validation.
- High-Performance Computing: Performance-critical routines are implemented in C++ using the Armadillo and Eigen linear algebra libraries to improve runtime.
Scientific Applications:
- 1D NMR Metabolomics Workflows: Enables complete analytical pipelines from raw Bruker NMR data through statistical modeling and validation.
Methodology:
Performance-critical routines are implemented in C++ and use the Armadillo and Eigen linear algebra libraries.
Collections
Details
- License:
- MIT
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Mac, Windows
- Programming Languages:
- R
- Added:
- 8/30/2026
- Last Updated:
- 8/30/2026
Operations
Publications
Documentation
User manual
https://bioconductor.org/packages/metabom8Downloads
- Source codehttps://tkimhofer.github.io/metabom8/