MGnifyR

MGnifyR facilitates integration and analysis of EBI MGnify metagenomics data in R by importing microbial data into TreeSummarizedExperiment format for direct compatibility with the miaverse framework.

Key Features:

• EBI MGnify Data Import: Imports microbial data from the EBI MGnify metagenomics resource into R.
• TreeSummarizedExperiment Integration: Converts imported data into TreeSummarizedExperiment (TreeSE) format.
• miaverse Compatibility: Outputs data in a format directly compatible with the miaverse framework for downstream analysis.

Scientific Applications:

• Metagenomics Data Analysis: Enables R-based analysis of microbial data from the EBI MGnify resource.
• Microbiome Research: Supports integration of metagenomic datasets into standardized Bioconductor workflows through the miaverse ecosystem.

Methodology:

Data import from EBI MGnify into TreeSummarizedExperiment format for use with miaverse.