mia

mia implements tools for microbiome analysis based on the SummarizedExperiment, SingleCellExperiment and TreeSummarizedExperiment infrastructure.

Key Features:

• Data Wrangling: Provides functions for data manipulation and wrangling in the context of taxonomic data.
• Community Indices: Implements calculation of community indices for microbiome data.
• Summarization: Includes functions for summarization of taxonomic data.

Scientific Applications:

• Microbiome Analysis: Supports comprehensive analysis workflows for microbiome studies using established Bioconductor data structures.
• Taxonomic Data Analysis: Enables specialized analytical approaches for taxonomically structured biological data.

Methodology:

Methods are built upon the SummarizedExperiment, SingleCellExperiment and TreeSummarizedExperiment infrastructure.