miaTime

miaTime provides tools for microbiome time series analysis based on (Tree)SummarizedExperiment infrastructure.

Key Features:

• Microbiome time series analysis: The package supports analysis of temporal dynamics in microbiome data.
• (Tree)SummarizedExperiment infrastructure: The package builds upon and leverages the (Tree)SummarizedExperiment class structure for data management and analysis.

Scientific Applications:

• Temporal microbiome studies: Analysis of microbiome data collected over time to characterize community dynamics and temporal patterns.

Methodology:

The package implements methods for microbiome time series analysis using (Tree)SummarizedExperiment infrastructure.