mobileRNA

mobileRNA provides methods to pre-process, analyse and visualise sRNA and mRNA populations by mapping reads to all genotypes simultaneously to identify RNAs produced by multiple genomes within a biological system.

Key Features:

• Multi-genome mapping: Maps sequencing reads to all genotypes at the same time to identify RNA populations from multiple genomes.
• sRNA population analysis: Provides methods to pre-process, analyse and visualise small RNA populations.
• mRNA population analysis: Provides methods to pre-process, analyse and visualise messenger RNA populations.
• Visualisation: Includes methods to visualise RNA population data and analysis results.

Scientific Applications:

• Host-pathogen RNA detection: Identifies RNA produced by pathogens within a host organism.
• Plant graft system analysis: Detects mobile RNAs in plant graft systems.
• Population-scale RNA comparison: Identifies differences between RNA populations in two conditions, both in production and abundance.

Methodology:

Reads are mapped to all genotypes at the same time to enable identification of RNAs produced by multiple genomes within a biological system.