nucleR

nucleR recognizes nucleosome positioning from next generation sequencing and tiling arrays experiments.

Key Features:

• Flexible recognition: nucleR provides non-parametric nucleosome positioning for flexible and fast recognition.
• Integration with standard genomics packages: The software is integrated with standard high-throughput genomics R packages.
• Visualization and export: nucleR allows for in situ visualization and export of results to common genome browser formats.

Scientific Applications:

• Nucleosome positioning from NGS experiments: nucleR analyzes next generation sequencing data to determine nucleosome positioning.
• Nucleosome positioning from tiling arrays: nucleR analyzes tiling array data to determine nucleosome positioning.

Methodology:

The sources do not provide detailed methodological description beyond non-parametric nucleosome positioning.