nuCpos

nuCpos predicts nucleosome positions and calculates local and whole nucleosomal histone binding affinity (HBA) scores for a given 147-bp sequence.

Key Features:

• Histone Binding Affinity Calculation: nuCpos calculates local and whole nucleosomal HBA scores for a given 147-bp sequence.

Scientific Applications:

• Nucleosome Position Prediction: nuCpos predicts nucleosome positions using chemical maps.

Methodology:

The package was originally designed to demonstrate the use of chemical maps in prediction; the dHMM-based prediction function was removed as the parental package NuPoP now provides chemical-map-based prediction.