Rbec

Rbec adapts DADA2 to analyze amplicon sequencing data from synthetic communities (SynComs) with known reference sequences for each strain, enabling accurate microbial composition profiling and contaminant prediction.

Key Features:

• Microbial Composition Profiling: Accurately profiles microbial compositions in synthetic communities using reference sequences for each strain.
• Contaminant Prediction: Predicts contaminants present in synthetic community samples.

Scientific Applications:

• Synthetic Community Analysis: Analyzes amplicon sequencing data from synthetic microbial communities where reference sequences are available.

Methodology:

Rbec is adapted from DADA2 for analysis of amplicon sequencing data from synthetic communities.