Rcwl

Rcwl provides a simple way to wrap command line tools and build Common Workflow Language (CWL) data analysis pipelines programmatically within R.

Key Features:

• Command Line Tool Wrapping: Rcwl wraps command line tools for integration into CWL workflows.
• Programmatic Pipeline Construction: Rcwl builds CWL data analysis pipelines programmatically within the R environment.
• Portability and Scalability: Rcwl leverages the CWL open standard to enable portable and scalable workflows across different tools and working environments.

Scientific Applications:

• Workflow Development: Rcwl supports the development of CWL pipelines within R.
• Workflow Maintenance: Rcwl facilitates maintenance of CWL pipelines in the R programming environment.

Methodology:

Rcwl programmatically wraps command line tools and constructs CWL data analysis pipelines within R.