rigvf
rigvf provides an R interface to the IGVF Catalog for integrating data on the impact of genomic variants on function with Bioconductor resources.
Key Features:
- IGVF Catalog Access: Provides programmatic access to data on the impact of genomic variants on function from the IGVF Catalog.
- Bioconductor Integration: Enables integration of IGVF Catalog data with Bioconductor resources and workflows.
Scientific Applications:
- Variant Function Analysis: Supports research investigating how genomic variants affect molecular and cellular function through access to curated catalog data.
- Genomic Data Integration: Facilitates incorporation of variant functional impact data into R-based bioinformatics pipelines and analyses.
Methodology:
The package implements an R programming interface to query and retrieve data from the IGVF Catalog.
Collections
Details
- License:
- MIT
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Mac, Windows
- Programming Languages:
- R
- Added:
- 8/30/2026
- Last Updated:
- 10/18/2026
Operations
Publications
Documentation
User manual
https://bioconductor.org/packages/rigvfDownloads
- Source codehttps://IGVF.github.io/rigvf