RNAmodR.AlkAnilineSeq

RNAmodR.AlkAnilineSeq implements detection of m7G, m3C and D modifications on RNA from AlkAnilineSeq experimental data by building on the RNAmodR core functionality to identify specific modification patterns in high throughput sequencing data.

Key Features:

• m7G modification detection: Detects 7-methylguanosine modification patterns from AlkAnilineSeq data.
• m3C modification detection: Detects 3-methylcytidine modification patterns from AlkAnilineSeq data.
• D modification detection: Detects dihydrouridine modification patterns from AlkAnilineSeq data.
• RNAmodR integration: Extends the core RNAmodR package functionality for modification-specific pattern recognition.

Scientific Applications:

• RNA modification mapping: Identifies specific RNA modification sites from AlkAnilineSeq high throughput sequencing data.
• Epitranscriptomic analysis: Supports quantitative study of m7G, m3C and D modifications in RNA samples.

Methodology:

Detection of modification-specific patterns in high throughput sequencing data using the core functionality of the RNAmodR package.