shinyDSP

shinyDSP interactively analyzes and visualizes Nanostring GeoMX Whole Transcriptome Atlas data with automated statistical testing and customizable graphical outputs.

Key Features:

• ROI Filtering: Regions of interest can be filtered based on user-provided metadata.
• Automated Statistical Testing: All pairwise and ANOVA-like testing are automatically performed upon selection of two or more groups of interest.
• Visualization Outputs: Available outputs include PCA, Volcano plots, tables, and heatmaps with highly customizable aesthetics.

Scientific Applications:

• Spatial Transcriptomics Analysis: Interactive analysis and visualization of Nanostring GeoMX Whole Transcriptome Atlas data for exploring gene expression patterns across tissue regions.

Methodology:

Pairwise and ANOVA-like statistical testing are automatically performed on user-defined groups of regions of interest.