SIMD

SIMD provides an inferential analysis method for detecting differentially expressed CpG sites in MeDIP-seq data.

Key Features:

• Statistical framework: Uses a statistical framework and EM algorithm to identify differentially expressed CpG sites.
• Methylation-level inference: Infers the methylation level for each CpG site from MeDIP-seq data.

Scientific Applications:

• Differential methylation detection: Detects differentially expressed CpG sites in MeDIP-seq data for methylation analysis.

Methodology:

Statistical framework with EM algorithm.