SpatialCPie

SpatialCPie facilitates cluster evaluation for spatial transcriptomics data by generating visualizations that display relationships between clusters to guide cluster identification and downstream applications.

Key Features:

• Cluster Relationship Visualization: Generates intuitive visualizations that display the relationships between clusters in spatial transcriptomics data.
• Interactive Exploration: Supports exploration of data with multiple plots in parallel through a shiny gadget.
• Resolution Comparison: Enables toggling between different cluster resolutions to identify the most appropriate visual cues.

Scientific Applications:

• Cluster Identification: Guides users during cluster identification in spatial transcriptomics datasets.
• Downstream Analysis: Supports downstream applications that rely on robust cluster evaluation.

Methodology:

SpatialCPie is implemented as an R package built around a shiny gadget for interactive data exploration.