StatescopeR

StatescopeR wraps Statescope to discover cell states from cell type-specific gene expression profiles inferred from bulk RNA profiles.

Key Features:

• R Wrapper: StatescopeR provides an R interface to the Statescope computational framework.
• Cell State Discovery: Identifies cell states from cell type-specific gene expression profiles.
• Bulk RNA Deconvolution: Infers cell type-specific expression profiles from bulk RNA profiles.

Scientific Applications:

• Cell State Identification: Discovery of cell states from deconvolved cell type-specific gene expression data.
• Bulk RNA Analysis: Analysis of bulk mRNA profiles to infer underlying cell type-specific expression patterns.

Methodology:

StatescopeR wraps the Statescope framework for computational discovery of cell states from cell type-specific gene expression profiles inferred from bulk RNA profiles.